CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Soybean-LG
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps L
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Contig_W82
Contig_W82_mismatch
Marker_BARCssr
Marker_RFLP
Marker_SSR-from-BAC
Marker_SSR-from-BAC_confirmed
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
map_based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Soybean - LG [ View Map Set Info ]
Map Name: L
Map Start: -4.26 cM
Map Stop: 117.2 cM
Features by Type:
21 Contig_W82
35 Contig_W82_mismatch
24 Marker_BARCssr
8 Marker_RFLP
4 Marker_SSR-from-BAC
9 Marker_SSR-from-BAC_confirmed
101 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 101.       of 5 | Next
Soybean - LG - L
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
WmFPC_Contig165 Contig_W82_mismatch 82.5 - 92.33 No other positions
WmFPC_Contig225 Contig_W82_mismatch 53.66 - 70.19 No other positions
WmFPC_Contig240 Contig_W82_mismatch 27.3 - 34.41 No other positions
WmFPC_Contig246 Contig_W82_mismatch 11.47 - 53.66 No other positions
WmFPC_Contig250 Contig_W82_mismatch 69.86 - 70.86 No other positions
WmFPC_Contig319 Contig_W82_mismatch 29.06 - 32.66 No other positions
WmFPC_Contig416 Contig_W82_mismatch 27.25 - 31.98 No other positions
L_m_Sat_405_1 Marker_BARCssr 29.62 Soybean - CONTIG - WmFPC_Contig7737 L_m2_Sat_405_1 Marker_BARCssr 2.47 (cM) Automated name-based View Maps
Soybean - GmComposite2003 - L Sat_405 SSR 29.62 (cM) Automated name-based View Maps
Soybean - GmConsensus30 - L Sat_405 SSR 29.62 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig416 L_m2_Sat_405_1 Marker_BARCssr 0.98 (cM) Automated name-based View Maps
WmFPC_Contig529 Contig_W82_mismatch 20.34 - 23.86 No other positions
L_r_Bng071_1 Marker_RFLP 22.1 Soybean - CONTIG - WmFPC_Contig415 Unmapped_r_Bng071_101 Marker_RFLP 1 (cM) Automated name-based View Maps
Soybean - GmConsensus30 - L Bng071_1 RFLP 22.07 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig529 L_r_Bng071_1 Marker_RFLP 0.26 (cM) Automated name-based View Maps
Soybean - GmComposite2003 - L Bng071_1 RFLP 22.07 (cM) Automated name-based View Maps
WmFPC_Contig539 Contig_W82_mismatch 28.66 - 35.34 No other positions
WmFPC_Contig835 Contig_W82_mismatch 52.95 - 54.37 No other positions
WmFPC_Contig851 Contig_W82_mismatch 105.38 - 112.22 No other positions
L_r_B157_2 Marker_RFLP 108.8 Soybean - CONTIG - WmFPC_Contig2012 Unmapped_r_B157_101 Marker_RFLP 1.09 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig851 L_r_B157_2 Marker_RFLP 4.05 (cM) Automated name-based View Maps
Soybean - GmComposite2003 - O B157_1 RFLP 96.01 (cM) Automated name-based View Maps
Soybean - GmConsensus30 - O B157_1 RFLP 96.01 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig7308 L_r_B157_2 Marker_RFLP 10.15 (cM) Automated name-based View Maps
WmFPC_Contig1276 Contig_W82_mismatch -0.08 - 2.7 No other positions
WmFPC_Contig1279 Contig_W82_mismatch 113.08 - 117.06 No other positions
L_m_Sat_245_1 Marker_BARCssr 115.07 Soybean - GmConsensus30 - L Sat_245 SSR 115.07 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig1279 L_m2_Sat_245_1 Marker_BARCssr 3.46 (cM) Automated name-based View Maps
Soybean - GmComposite2003 - L Sat_245 SSR 115.07 (cM) Automated name-based View Maps
WmFPC_Contig1399 Contig_W82_mismatch 29.9 - 30.87 No other positions
L_m_SSR1778_1 Marker_SSR-from-BAC 29.9 Soybean - GmComposite2003 - L SSR1778_1 SSR 29.9 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig1399 L_m_SSR1778_1 Marker_SSR-from-BAC 5.76 (cM) Automated name-based View Maps
L_m_Satt652_1 Marker_BARCssr 30.87 Soybean - CONTIG - WmFPC_Contig1399 L_m2_Satt652_1 Marker_BARCssr 3.68 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig6136 L_m2_Satt652_1 Marker_BARCssr 15.76 (cM) Automated name-based View Maps
Soybean - GmConsensus30 - L Satt652 SSR 30.88 (cM) Automated name-based View Maps
Soybean - GmComposite2003 - L Satt652 SSR 30.87 (cM) Automated name-based View Maps
WmFPC_Contig1625 Contig_W82_mismatch 40.14 - 41.86 No other positions
L_m_Satt462_1 Marker_BARCssr 41 Soybean - GmConsensus30 - L Satt462 SSR 41 (cM) Automated name-based View Maps
Soybean - GmComposite2003 - L Satt462 SSR 41 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig1625 L_m2_Satt462_1 Marker_BARCssr 0.63 (cM) Automated name-based View Maps
WmFPC_Contig1697 Contig_W82_mismatch 21.58 - 24.82 No other positions
L_m_SSR0824_1 Marker_SSR-from-BAC_confirmed 23.2 Soybean - GmComposite2003 - L SSR0824_1 SSR 23.2 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig1697 L_m_SSR0824_1 Marker_SSR-from-BAC_confirmed 0.31 (cM) Automated name-based View Maps
WmFPC_Contig1882 Contig_W82_mismatch 58.97 - 60.07 No other positions