CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Soybean-LG
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps D1a
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Contig_W82
Contig_W82_mismatch
Marker_BARCssr
Marker_BARCssr_confirmed
Marker_RFLP
Marker_SSR-from-BAC
Marker_SSR-from-BAC_confirmed
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
map_based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Soybean - LG [ View Map Set Info ]
Map Name: D1a
Map Start: 0 cM
Map Stop: 121.7 cM
Features by Type:
23 Contig_W82
47 Contig_W82_mismatch
23 Marker_BARCssr
3 Marker_BARCssr_confirmed
3 Marker_RFLP
3 Marker_SSR-from-BAC
15 Marker_SSR-from-BAC_confirmed
117 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 117.       of 5 | Next
Soybean - LG - D1a
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
WmFPC_Contig165 Contig_W82_mismatch 51.66 - 61.48 No other positions
WmFPC_Contig181 Contig_W82_mismatch 36.17 - 45.55 No other positions
WmFPC_Contig214 Contig_W82_mismatch 72.26 - 109.66 No other positions
WmFPC_Contig286 Contig_W82_mismatch 76.72 - 78.25 No other positions
D1a_m_Satt077_1 Marker_BARCssr 77.48 Soybean - GmConsensus30 - D1a Satt077 SSR 77.49 (cM) Automated name-based View Maps
Soybean - GmComposite2003 - D1a Satt077 SSR 77.48 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig286 D1a_m2_Satt077_1 Marker_BARCssr 0.86 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig2567 D1a_m2_Satt077_1 Marker_BARCssr 4.76 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig7286 D1a_m2_Satt077_1 Marker_BARCssr 0.74 (cM) Automated name-based View Maps
WmFPC_Contig348 Contig_W82_mismatch 47.92 - 52.24 No other positions
WmFPC_Contig369 Contig_W82_mismatch 100.82 - 112.56 No other positions
WmFPC_Contig381 Contig_W82_mismatch 36.33 - 45.4 No other positions
WmFPC_Contig457 Contig_W82_mismatch 25.25 - 26.75 No other positions
D1a_r_K647_1 Marker_RFLP 26 Soybean - GmConsensus30 - A1 K647_2 RFLP 24.9 (cM) Automated name-based View Maps
Soybean - GmComposite2003 - A1 K647_2 RFLP 24.9 (cM) Automated name-based View Maps
Soybean - GmComposite2003 - D1a K647_1 RFLP 94.87 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig457 Unmapped_r_K647_102 Marker_RFLP 0.5 (cM) Automated name-based View Maps
Soybean - GmConsensus30 - D1a K647_1 RFLP 94.87 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig322 Unmapped_r_K647_101 Marker_RFLP 3.1 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig457 D1a_r_K647_1 Marker_RFLP 0.47 (cM) Automated name-based View Maps
WmFPC_Contig551 Contig_W82_mismatch 46.26 - 53.42 No other positions
WmFPC_Contig569 Contig_W82_mismatch 52.48 - 54.84 No other positions
WmFPC_Contig591 Contig_W82_mismatch 74.44 - 76.06 No other positions
D1a_m_Sat_036_1 Marker_BARCssr 75.25 Soybean - GmConsensus30 - D1a Sat_036 SSR 75.25 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig591 D1a_m2_Sat_036_1 Marker_BARCssr 1.4 (cM) Automated name-based View Maps
Soybean - GmComposite2003 - D1a Sat_036 SSR 75.25 (cM) Automated name-based View Maps
WmFPC_Contig641 Contig_W82_mismatch 64 - 68.76 No other positions
D1a_m_Sat_106_1 Marker_BARCssr 66.38 Soybean - GmConsensus30 - D1a Sat_106 SSR 66.39 (cM) Automated name-based View Maps
Soybean - GmComposite2003 - D1a Sat_106 SSR 66.38 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig641 D1a_m2_Sat_106_1 Marker_BARCssr 1.03 (cM) Automated name-based View Maps
WmFPC_Contig709 Contig_W82_mismatch 40.09 - 41.63 No other positions
WmFPC_Contig751 Contig_W82_mismatch 63.95 - 67.29 No other positions
WmFPC_Contig851 Contig_W82_mismatch 37.44 - 44.28 No other positions
WmFPC_Contig1002 Contig_W82_mismatch 49.54 - 50.14 No other positions
WmFPC_Contig1027 Contig_W82_mismatch 49.8 - 58.7 No other positions
D1a_m_SSR0250_1 Marker_SSR-from-BAC_confirmed 49.8 Soybean - GmComposite2003 - D1a SSR0250_1 SSR 49.8 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig1027 D1a_m_SSR0250_1 Marker_SSR-from-BAC_confirmed 3.56 (cM) Automated name-based View Maps
D1a_m_SSR2808_1 Marker_SSR-from-BAC_confirmed 58.7 Soybean - CONTIG - WmFPC_Contig1027 D1a_m_SSR2808_1 Marker_SSR-from-BAC_confirmed 3.62 (cM) Automated name-based View Maps
Soybean - GmComposite2003 - D1a SSR2808_1 SSR 58.7 (cM) Automated name-based View Maps
WmFPC_Contig1127 Contig_W82_mismatch 98.55 - 100.61 No other positions
D1a_m_Satt407_1 Marker_BARCssr 99.58 Soybean - GmConsensus30 - D1a Satt407 SSR 99.59 (cM) Automated name-based View Maps
Soybean - GmComposite2003 - D1a Satt407 SSR 99.58 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig1127 D1a_m2_Satt407_1 Marker_BARCssr 1.43 (cM) Automated name-based View Maps