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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Soybean-LG
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps C1
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Contig_W82
Contig_W82_mismatch
Marker_BARCssr
Marker_RFLP
Marker_SSR-from-BAC
Marker_SSR-from-BAC_confirmed
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
map_based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Soybean - LG [ View Map Set Info ]
Map Name: C1
Map Start: 0 cM
Map Stop: 135.49 cM
Features by Type:
12 Contig_W82
19 Contig_W82_mismatch
9 Marker_BARCssr
2 Marker_RFLP
2 Marker_SSR-from-BAC
12 Marker_SSR-from-BAC_confirmed
56 Total

Map Features

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Items 1 to 25 of 56.       of 3 | Next
Soybean - LG - C1
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
WmFPC_Contig163 Contig_W82_mismatch 111.67 - 122.33 No other positions
C1_m_SSR1861_1 Marker_SSR-from-BAC 117 Soybean - CONTIG - WmFPC_Contig163 C1_m_SSR1861_1 Marker_SSR-from-BAC 5.61 (cM) Automated name-based View Maps
Soybean - GmComposite2003 - C1 SSR1861_1 SSR 117 (cM) Automated name-based View Maps
WmFPC_Contig202 Contig_W82_mismatch 73.78 - 78.22 No other positions
C1_m_Sat_077_1 Marker_BARCssr 76 Soybean - CONTIG - WmFPC_Contig1056 C1_m2_Sat_077_1 Marker_BARCssr 0.78 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig202 C1_m2_Sat_077_1 Marker_BARCssr 2.9 (cM) Automated name-based View Maps
Soybean - GmComposite2003 - C1 Sat_077 SSR 76 (cM) Automated name-based View Maps
Soybean - GmConsensus30 - C1 Sat_077 SSR 76 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig5622 C1_m2_Sat_077_1 Marker_BARCssr 3.58 (cM) Automated name-based View Maps
WmFPC_Contig240 Contig_W82_mismatch 70.28 - 77.39 No other positions
WmFPC_Contig246 Contig_W82_mismatch 69.31 - 78.36 No other positions
WmFPC_Contig286 Contig_W82_mismatch 70.83 - 72.36 No other positions
C1_m_SSR0138_1 Marker_SSR-from-BAC_confirmed 71.6 Soybean - CONTIG - WmFPC_Contig286 C1_m_SSR0138_1 Marker_SSR-from-BAC_confirmed 1.03 (cM) Automated name-based View Maps
Soybean - GmComposite2003 - C1 SSR0138_1 SSR 71.6 (cM) Automated name-based View Maps
WmFPC_Contig751 Contig_W82_mismatch 74.74 - 78.08 No other positions
C1_m_Sat_416_1 Marker_BARCssr 76.41 Soybean - CONTIG - WmFPC_Contig751 C1_m2_Sat_416_1 Marker_BARCssr 0.28 (cM) Automated name-based View Maps
Soybean - GmConsensus30 - C1 Sat_416 SSR 76.42 (cM) Automated name-based View Maps
Soybean - GmComposite2003 - C1 Sat_416 SSR 76.41 (cM) Automated name-based View Maps
WmFPC_Contig1056 Contig_W82_mismatch 74.47 - 77.53 No other positions
WmFPC_Contig1274 Contig_W82_mismatch 71.58 - 76.09 No other positions
WmFPC_Contig5622 Contig_W82_mismatch 69.95 - 82.05 No other positions
WmFPC_Contig7350 Contig_W82_mismatch 71.09 - 79.12 No other positions
WmFPC_Contig7434 Contig_W82_mismatch 65.89 - 69.7 No other positions
C1_m_SSR0432_1 Marker_SSR-from-BAC_confirmed 67.8 Soybean - CONTIG - WmFPC_Contig7434 C1_m_SSR0432_1 Marker_SSR-from-BAC_confirmed 1.78 (cM) Automated name-based View Maps
Soybean - GmComposite2003 - C1 SSR0432_1 SSR 67.8 (cM) Automated name-based View Maps
WmFPC_Contig2401 Contig_W82 88.68 - 91.54 No other positions
C1_m_Sat_311_1 Marker_BARCssr 90.11 Soybean - GmComposite2003 - C1 Sat_311 SSR 90.11 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig2401 C1_m2_Sat_311_1 Marker_BARCssr 1.12 (cM) Automated name-based View Maps
Soybean - GmConsensus30 - C1 Sat_311 SSR 90.11 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig672 C1_m2_Sat_311_1 Marker_BARCssr 0.81 (cM) Automated name-based View Maps
WmFPC_Contig2644 Contig_W82 72.75 - 74 No other positions
C1_m_Satt161_1 Marker_BARCssr 73.38 Soybean - GmComposite2003 - C1 Satt161 SSR 73.38 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig136 C1_m2_Satt161_1 Marker_BARCssr 0.47 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig2644 C1_m2_Satt161_1 Marker_BARCssr 0.81 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig151 C1_m2_Satt161_1 Marker_BARCssr 0.48 (cM) Automated name-based View Maps
Soybean - GmConsensus30 - C1 Satt161 SSR 73.39 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig7630 C1_m2_Satt161_1 Marker_BARCssr 0.44 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig28 C1_m2_Satt161_1 Marker_BARCssr 2.12 (cM) Automated name-based View Maps
WmFPC_Contig2651 Contig_W82 126.73 - 127.37 No other positions
C1_m_Satt682_1 Marker_BARCssr 127.05 Soybean - GmComposite2003 - C1 Satt682 SSR 127.05 (cM) Automated name-based View Maps
Soybean - GmConsensus30 - C1 Satt682 SSR 127.06 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig2651 C1_m2_Satt682_1 Marker_BARCssr 0.26 (cM) Automated name-based View Maps
WmFPC_Contig2723 Contig_W82 86.89 - 87.31 No other positions
C1_m_SSR0830_1 Marker_SSR-from-BAC_confirmed 87.1 Soybean - CONTIG - WmFPC_Contig2723 C1_m_SSR0830_1 Marker_SSR-from-BAC_confirmed 0.15 (cM) Automated name-based View Maps
Soybean - GmComposite2003 - C1 SSR0830_1 SSR 87.1 (cM) Automated name-based View Maps
WmFPC_Contig3035 Contig_W82 134.51 - 135.49 No other positions