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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set Soybean-GmComposite2003
(Reference Set)
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Correspondences
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Maps D2
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Gene
Marker
PCR
QTL_fungal
QTL_inorganic
QTL_insect
QTL_leaf-stem
QTL_misc
QTL_nematode
QTL_oil
QTL_other-seed
QTL_pod
QTL_protein
QTL_root
QTL_whole-plant
QTL_yield
RAPD
RFLP
SNP
SSR
Other
 
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Features:		 No Yes
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 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
map_based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Soybean - GmComposite2003 [ View Map Set Info ]
Map Name: D2
Map Start: 0 cM
Map Stop: 140.87 cM
Features by Type:
3 Gene
1 Marker
1 PCR
11 QTL_fungal
7 QTL_inorganic
1 QTL_insect
6 QTL_leaf-stem
3 QTL_misc
5 QTL_nematode
15 QTL_oil
22 QTL_other-seed
2 QTL_pod
7 QTL_protein
3 QTL_root
9 QTL_whole-plant
5 QTL_yield
3 RAPD
23 RFLP
65 SNP
75 SSR
267 Total

Map Features

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Items 1 to 25 of 267.       of 11 | Next
Soybean - GmComposite2003 - D2
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Phytoph 11-20 QTL_fungal 86.66 - 88.66 No other positions
Phytoph 12-2 QTL_fungal 88.01 - 93.41 No other positions
Phytoph 9-5 QTL_fungal 85.69 - 93.77 No other positions
Sclero 2-10 QTL_fungal 123.31 - 125.31 No other positions
Sclero 2-8 QTL_fungal 23.52 - 25.52 No other positions
Sclero 2-9 QTL_fungal 87.02 - 89.02 No other positions
Sclero 3-6 QTL_fungal 56.07 - 58.07 No other positions
Sclero 3-7 QTL_fungal 123.31037 - 125.31 No other positions
Sclero 4-2 QTL_fungal 88.02 - 93.71 No other positions
Sclero 6-4 QTL_fungal 123.31036 - 125.31 No other positions
SDS 11-2 QTL_fungal 87.66 - 92.12 No other positions
Al tolerance 3-3 QTL_inorganic 86.42 - 95.42 No other positions
Al tolerance 3-8 QTL_inorganic 86.42 - 95.55 No other positions
Chlorosis, leaflet Mn induced 1-2 QTL_inorganic 56.51 - 58.51 No other positions
pH sensitivity 1-1 QTL_inorganic 65.26 - 67.26 No other positions
pH sensitivity 1-2 QTL_inorganic 79.19 - 81.19 No other positions
pH sensitivity 1-3 QTL_inorganic 79.19 - 81.19 No other positions
pH sensitivity 1-4 QTL_inorganic 65.26 - 67.26 No other positions
Corn earworm 7-3 QTL_insect 99.1 - 101.1 No other positions
Carbon isotope discrimination 1-3 QTL_leaf-stem 2.2 - 4.2 No other positions
Leaflet ash 1-5 QTL_leaf-stem 72.5 - 74.5 No other positions
Leaflet chlorophyll 1-11 QTL_leaf-stem 85.64 - 87.38 No other positions
Leaflet length 7-5 QTL_leaf-stem 38.3 - 40.3 No other positions
Leaflet length 9-1 QTL_leaf-stem 119.3 - 121.3 No other positions
Leaflet shape 8-7 QTL_leaf-stem 119.3 - 121.3 No other positions