CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Help | Tutorial


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Soybean-LG
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps J
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Contig_W82
Contig_W82_mismatch
Marker_BARCssr
Marker_BARCssr_confirmed
Marker_RFLP
Marker_SSR-from-BAC
Marker_SSR-from-BAC_confirmed
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
map_based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Soybean - LG [ View Map Set Info ]
Map Name: J
Map Start: 0 cM
Map Stop: 90.83 cM
Features by Type:
12 Contig_W82
26 Contig_W82_mismatch
17 Marker_BARCssr
2 Marker_BARCssr_confirmed
1 Marker_RFLP
1 Marker_SSR-from-BAC
7 Marker_SSR-from-BAC_confirmed
66 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 66.       of 3 | Next
Soybean - LG - J
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
WmFPC_Contig361 Contig_W82 40.36 - 42.32 No other positions
J_m_Sat_151_1 Marker_BARCssr 41.34 Soybean - CONTIG - WmFPC_Contig181 J_m2_Sat_151_1 Marker_BARCssr 2.08 (cM) Automated name-based View Maps
Soybean - GmComposite2003 - J Sat_151 SSR 41.34 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig361 J_m2_Sat_151_1 Marker_BARCssr 0.54 (cM) Automated name-based View Maps
Soybean - GmConsensus30 - J Sat_151 SSR 41.35 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig225 J_m2_Sat_151_1 Marker_BARCssr 1.3 (cM) Automated name-based View Maps
WmFPC_Contig1811 Contig_W82 36.88 - 38.52 No other positions
J_m_SSR2313_1 Marker_SSR-from-BAC 37.7 Soybean - CONTIG - WmFPC_Contig1811 J_m_SSR2313_1 Marker_SSR-from-BAC 0.64 (cM) Automated name-based View Maps
Soybean - GmComposite2003 - J SSR2313_1 SSR 37.7 (cM) Automated name-based View Maps
WmFPC_Contig1821 Contig_W82 3.66 - 4.88 No other positions
J_m_SSR0591_1 Marker_SSR-from-BAC_confirmed 4.27 Soybean - CONTIG - WmFPC_Contig1821 J_m_SSR0591_1 Marker_SSR-from-BAC_confirmed 0.8 (cM) Automated name-based View Maps
Soybean - GmComposite2003 - J SSR0591_1 SSR 4.27 (cM) Automated name-based View Maps
WmFPC_Contig3569 Contig_W82 15.62 - 16.29 No other positions
J_m_Satt674_1 Marker_BARCssr 15.95 Soybean - CONTIG - WmFPC_Contig3569 J_m2_Satt674_1 Marker_BARCssr 0.43 (cM) Automated name-based View Maps
Soybean - GmConsensus30 - J Satt674 SSR 15.94 (cM) Automated name-based View Maps
Soybean - GmComposite2003 - J Satt674 SSR 15.95 (cM) Automated name-based View Maps
WmFPC_Contig3825 Contig_W82 89.83 - 90.83 No other positions
J_m_Sat_393_1 Marker_BARCssr 90.33 Soybean - GmComposite2003 - J Sat_393 SSR 90.33 (cM) Automated name-based View Maps
Soybean - GmConsensus30 - J Sat_393 SSR 90.32 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig3825 J_m2_Sat_393_1 Marker_BARCssr 0.25 (cM) Automated name-based View Maps
WmFPC_Contig4085 Contig_W82 23.2 - 23.61 No other positions
J_m_SSR0847_1 Marker_SSR-from-BAC_confirmed 23.4 Soybean - GmComposite2003 - J SSR0847_1 SSR 23.4 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig4085 J_m_SSR0847_1 Marker_SSR-from-BAC_confirmed 0.25 (cM) Automated name-based View Maps
WmFPC_Contig5217 Contig_W82 27.78 - 28.14 No other positions
J_m_Sat_339_1 Marker_BARCssr 27.96 Soybean - CONTIG - WmFPC_Contig43 J_m2_Sat_339_1 Marker_BARCssr 1.19 (cM) Automated name-based View Maps
Soybean - GmConsensus30 - J Sat_339 SSR 27.97 (cM) Automated name-based View Maps
Soybean - GmComposite2003 - J Sat_339 SSR 27.96 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig5217 J_m2_Sat_339_1 Marker_BARCssr 0.16 (cM) Automated name-based View Maps
WmFPC_Contig5461 Contig_W82 11.47 - 12.01 No other positions
J_m_Satt249_1 Marker_BARCssr 11.74 Soybean - CONTIG - WmFPC_Contig5461 J_m2_Satt249_1 Marker_BARCssr 0.14 (cM) Automated name-based View Maps
Soybean - GmConsensus30 - J Satt249 SSR 11.74 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig756 J_m2_Satt249_1 Marker_BARCssr 8.69 (cM) Automated name-based View Maps
Soybean - GmComposite2003 - J Satt249 SSR 11.74 (cM) Automated name-based View Maps
WmFPC_Contig7257 Contig_W82 74.5 - 75.73 No other positions
J_m_Sat_224_1 Marker_BARCssr 75.12 Soybean - GmConsensus30 - J Sat_224 SSR 75.13 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig7257 J_m2_Sat_224_1 Marker_BARCssr 0.68 (cM) Automated name-based View Maps
Soybean - GmComposite2003 - J Sat_224 SSR 75.12 (cM) Automated name-based View Maps
WmFPC_Contig7260 Contig_W82 64.26 - 71.74 No other positions
J_m_SSR3459_1 Marker_SSR-from-BAC_confirmed 68 Soybean - GmComposite2003 - J SSR3459_1 SSR 68 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig7260 J_m_SSR3459_1 Marker_SSR-from-BAC_confirmed 6.3 (cM) Automated name-based View Maps
WmFPC_Contig3882 Contig_W82 44.49 - 54.7 No other positions
J_m_Sat_361_1 Marker_BARCssr 44.49 Soybean - CONTIG - WmFPC_Contig3882 J_m2_Sat_361_1 Marker_BARCssr 0.24 (cM) Automated name-based View Maps
Soybean - GmComposite2003 - J Sat_361 SSR 44.49 (cM) Automated name-based View Maps
Soybean - GmConsensus30 - J Sat_361 SSR 44.49 (cM) Automated name-based View Maps
J_r_Bng063_1 Marker_RFLP 54.7 Soybean - GmConsensus30 - J Bng063_1 RFLP 57.4 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig47 J_r_Bng063_1 Marker_RFLP 1.47 (cM) Automated name-based View Maps
Soybean - GmComposite2003 - J Bng063_1 RFLP 57.4 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig3882 J_r_Bng063_1 Marker_RFLP 0.25 (cM) Automated name-based View Maps
WmFPC_Contig4657 Contig_W82 23.68 - 24.5 No other positions
J_m_Sct_046_1 Marker_BARCssr 24.09 Soybean - CONTIG - WmFPC_Contig1888 J_m2_Sct_046_1 Marker_BARCssr 2.31 (cM) Automated name-based View Maps
Soybean - GmConsensus30 - J Sct_046 SSR 24.09 (cM) Automated name-based View Maps
Soybean - GmComposite2003 - J Sct_046 SSR 24.09 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig4657 J_m2_Sct_046_1 Marker_BARCssr 0.22 (cM) Automated name-based View Maps