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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Soybean-LG
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps A1
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Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Contig_W82
Contig_W82_mismatch
Marker_BARCssr
Marker_BARCssr_confirmed
Marker_RFLP
Marker_SSR-from-BAC
Marker_SSR-from-BAC_confirmed
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
map_based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Soybean - LG [ View Map Set Info ]
Map Name: A1
Map Start: -3.56 cM
Map Stop: 100.6 cM
Features by Type:
28 Contig_W82
40 Contig_W82_mismatch
21 Marker_BARCssr
2 Marker_BARCssr_confirmed
7 Marker_RFLP
3 Marker_SSR-from-BAC
12 Marker_SSR-from-BAC_confirmed
113 Total

Map Features

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Items 1 to 25 of 113.       of 5 | Next
Soybean - LG - A1
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
WmFPC_Contig181 Contig_W82_mismatch 26.38 - 35.76 No other positions
WmFPC_Contig204 Contig_W82_mismatch 92.43 - 95.95 No other positions
WmFPC_Contig225 Contig_W82_mismatch 42.8 - 50.1 No other positions
WmFPC_Contig227 Contig_W82_mismatch -2.3 - 2.29 No other positions
A1_m_Sat_137_1 Marker_BARCssr_confirmed 0 Soybean - GmComposite2003 - A1 Sat_137 SSR 0 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig227 A1_m_Sat_137_1 Marker_BARCssr_confirmed 3.06 (cM) Automated name-based View Maps
Soybean - GmConsensus30 - A1 Sat_137 SSR 0 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig240 A1_m_Sat_137_1 Marker_BARCssr_confirmed 2.71 (cM) Automated name-based View Maps
WmFPC_Contig240 Contig_W82_mismatch -3.56 - 3.56 No other positions
WmFPC_Contig286 Contig_W82_mismatch 57.02 - 58.55 No other positions
WmFPC_Contig383 Contig_W82_mismatch 89.8 - 92.6 No other positions
A1_r_Bng077_1 Marker_RFLP 91.2 Soybean - GmConsensus30 - A1 Bng077_1 RFLP 91.24 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig7498 Unmapped_r_Bng077_102 Marker_RFLP 2.5 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig383 A1_r_Bng077_1 Marker_RFLP 0.62 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig2230 A1_r_Bng077_2 Marker_RFLP 0.88 (cM) Automated name-based View Maps
Soybean - GmConsensus30 - A2 Bng077_2 RFLP 18.55 (cM) Automated name-based View Maps
Soybean - GmComposite2003 - A1 Bng077_1 RFLP 91.23 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig7465 Unmapped_r_Bng077_101 Marker_RFLP 3.64 (cM) Automated name-based View Maps
Soybean - GmComposite2003 - A2 Bng077_2 RFLP 18.54 (cM) Automated name-based View Maps
WmFPC_Contig395 Contig_W82_mismatch 49.33 - 54.58 No other positions
WmFPC_Contig457 Contig_W82_mismatch 23.16 - 24.64 No other positions
A1_r_Bng074_2 Marker_RFLP 23.9 Soybean - GmConsensus30 - A1 Bng074_2 RFLP 23.95 (cM) Automated name-based View Maps
Soybean - GmConsensus30 - D1a Bng074_1 RFLP 93.89 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig457 A1_r_Bng074_2 Marker_RFLP 0.5 (cM) Automated name-based View Maps
Soybean - GmComposite2003 - D1a Bng074_1 RFLP 93.88 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig322 Unmapped_r_Bng074_101 Marker_RFLP 3.1 (cM) Automated name-based View Maps
Soybean - GmComposite2003 - A1 Bng074_2 RFLP 23.95 (cM) Automated name-based View Maps
WmFPC_Contig464 Contig_W82_mismatch 76.57 - 80.31 No other positions
WmFPC_Contig519 Contig_W82_mismatch 43.95 - 48.95 No other positions
WmFPC_Contig562 Contig_W82_mismatch 31.93 - 33.42 No other positions
WmFPC_Contig584 Contig_W82_mismatch 27 - 32.01 No other positions
A1_m_SSR3428_1 Marker_SSR-from-BAC 29.5 Soybean - GmComposite2003 - A1 SSR3428_1 SSR 29.5 (cM) Automated name-based View Maps
Soybean - CONTIG - WmFPC_Contig584 A1_m_SSR3428_1 Marker_SSR-from-BAC 0.65 (cM) Automated name-based View Maps
WmFPC_Contig610 Contig_W82_mismatch 26.77 - 29.39 No other positions
WmFPC_Contig756 Contig_W82_mismatch 42.02 - 50.88 No other positions
WmFPC_Contig1043 Contig_W82_mismatch 57.09 - 58.49 No other positions
WmFPC_Contig1570 Contig_W82_mismatch 51.95 - 52.32 No other positions
WmFPC_Contig2084 Contig_W82_mismatch 25.71 - 32.19 No other positions
WmFPC_Contig2760 Contig_W82_mismatch 25.68 - 26.72 No other positions
A1_m_SSR2415_1 Marker_SSR-from-BAC_confirmed 26.2 Soybean - CONTIG - WmFPC_Contig2760 A1_m_SSR2415_1 Marker_SSR-from-BAC_confirmed 0.4 (cM) Automated name-based View Maps
Soybean - GmComposite2003 - A1 SSR2415_1 SSR 26.2 (cM) Automated name-based View Maps
WmFPC_Contig3020 Contig_W82_mismatch 27.51 - 28.49 No other positions