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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set Soybean-GmComposite2003
(Reference Set)
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Correspondences
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Maps C2
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Gene
PCR
QTL_fungal
QTL_inorganic
QTL_insect
QTL_leaf-stem
QTL_misc
QTL_nematode
QTL_oil
QTL_other-seed
QTL_pod
QTL_protein
QTL_reprod-period
QTL_root
QTL_whole-plant
QTL_yield
RAPD
RFLP
SNP
SSR
Other
 
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Features:		 No Yes
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Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
map_based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Soybean - GmComposite2003 [ View Map Set Info ]
Map Name: C2
Map Start: -1 cM
Map Stop: 157.88 cM
Features by Type:
3 Gene
2 PCR
18 QTL_fungal
7 QTL_inorganic
3 QTL_insect
19 QTL_leaf-stem
4 QTL_misc
5 QTL_nematode
17 QTL_oil
45 QTL_other-seed
37 QTL_pod
9 QTL_protein
30 QTL_reprod-period
2 QTL_root
47 QTL_whole-plant
37 QTL_yield
2 RAPD
50 RFLP
54 SNP
68 SSR
459 Total

Map Features

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Items 1 to 25 of 459.       of 19 | Next
Soybean - GmComposite2003 - C2
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Phytoph 5-1 QTL_fungal 42.36 - 112.9 No other positions
Phytoph 6-6 QTL_fungal 113.38 - 113.95 No other positions
Phytoph 6-7 QTL_fungal 107.58 - 111.68 No other positions
Phytoph 6-8 QTL_fungal 117.73 - 121.26 No other positions
Rhizoc root and hypocot rot 1-1a QTL_fungal 39.3 - 41.3 No other positions
Rhizoc root and hypocot rot 1-1b QTL_fungal 39.30002 - 41.3 No other positions
Sclero 7-1 QTL_fungal 112.84 - 117.45 No other positions
Sclero 7-2 QTL_fungal 98.07 - 113.62 No other positions
SDS 1-1 QTL_fungal 149 - 151 No other positions
SDS 1-3 QTL_fungal 131 - 133 No other positions
SDS 11-1 QTL_fungal 107.58 - 117.87 No other positions
SDS 13-11 QTL_fungal 51.5 - 57.3 No other positions
SDS 13-14 QTL_fungal 17.1 - 32.74 No other positions
SDS 13-6 QTL_fungal 30.79 - 38.04 No other positions
SDS 2-5 QTL_fungal 149.00001 - 151 No other positions
SDS 2-6 QTL_fungal 131.00001 - 133 No other positions
SDS 7-5 QTL_fungal 144.48 - 146.48 No other positions
SDS 8-2 QTL_fungal 120.27 - 122.27 No other positions
Al tolerance 2-2 QTL_inorganic 126.23 - 145.47 No other positions
Al tolerance 2-3 QTL_inorganic 126.23 - 145.47 No other positions
Flood tolerance 4-1 QTL_inorganic 107.58 - 123.37 No other positions
Flood tolerance 4-10 QTL_inorganic 112.62 - 114.62 No other positions
Flood tolerance 4-14 QTL_inorganic 101.75 - 103.75 No other positions
Necrosis, root Mn induced 1-2 QTL_inorganic 44.76 - 46.76 No other positions
Necrosis, root Mn induced 1-3 QTL_inorganic 68.67 - 70.67 No other positions